Quickstart

Usage

Development

cookbook

What is cookbook?

cookbook is a comprehensive toolbox designed to streamline the preprocessing of brain MRI data for deep learning applications. It offers a suite of standardized scripts tailored for anatomical, functional, and diffusion magnetic resonance imaging (MRI), ensuring consistent and high-quality data preparation across studies. In addition to preprocessing pipelines, brainprep includes robust quality control (QC) routines to help researchers assess data integrity and detect potential artifacts or anomalies.

Important Links

• Official source code repo: https://github.com/brainprepdesk/cookbook

• HTML documentation (stable release): https://brainprepdesk.github.io/cookbook/stable

• HTML documentation (dev): https://brainprepdesk.github.io/cookbook/dev

Dependencies

The required dependencies to use the software are listed in the file pyproject.toml.