Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

brainprep.interfaces.morphologist.morphologist_cmd

brainprep.interfaces.morphologist.morphologist_cmd(t1_file, output_dir, workspace_dir, entities)

Morphologist command wrapper.

Parameters:

t1_fileFile

Path to the input T1w image file.

output_dirDirectory

Directory where the prep-processing related outputs will be saved.

workspace_dir: Directory

Working directory with the workspace of the current processing, and where subject specific data are symlinked.

entitiesdict

A dictionary of parsed BIDS entities including modality.

Returns:

commandlist[str]

Pre-processing command-line.