Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.
brainprep.interfaces.reorient¶
- brainprep.interfaces.reorient(image_file, output_dir, entities)[source]¶
Reorients a BIDS-compliant anatomical image using FSL’s fslreorient2std.
- Parameters:
- image_fileFile
Path to the input image file.
- output_dirDirectory
Directory where the reoriented image will be saved.
- entitiesdict
A dictionary of parsed BIDS entities including modality.
- Returns:
- commandlist[str]
Reorientation command-line.
- outputstuple[File]
reorient_image_file : File - Reoriented input image file.