API ReferencesΒΆ
This is the class and function reference of brainprep. Please refer to
the user guide for more information and usage examples.
brainprep.cli: Command-line interface (CLI) utilities for BrainPrep workflows.brainprep.config: Configuration used by BrainPrep.brainprep.datasets.ibc: Fetcher to download IBC dataset from OpenNeuro.brainprep.datasets.openms: Fetcher to download the OpenMS dataset from GitHub.brainprep.datasets: Module that implements dataset fetchers.brainprep.datasets.utils: Dataset creation tools.brainprep.decorators: Defines a hook-driven decorator step with common hooks.brainprep.interfaces.ants: ANTs functions.brainprep.interfaces.cat12: CAT12 functions.brainprep.interfaces.fmriprep: fMRIprep functions.brainprep.interfaces.freesurfer: FreeSurfer functions.brainprep.interfaces.fsl: FSL functions.brainprep.interfaces.mriqc: MRIQC functions.brainprep.interfaces.plotting: Plotting functions.brainprep.interfaces.qualcheck: Quality check functions.brainprep.interfaces: Module that implements interfaces.brainprep.interfaces.utils: Utils functions.brainprep.reporting.html_reporting: Module that implements a HTML reporting tool.brainprep.reporting: Module that implements reporting tools.brainprep.reporting.rst_reporting: Module that implements a RST reporting tool.brainprep.reporting.utils: Reporting tools.brainprep.utils.bunch: An extension of dictionaries by enabling values to be accessed by a key or bybrainprep.utils.color: Utility methods to print the results in a terminal using term colors.brainprep.utils: Module that implements tools.brainprep.utils.utils: Module that contains some utility functions.brainprep.workflow.defacing: Brain image defacing workflow.brainprep.workflow.fmriprep: Functional MRI pre-processing workflow.brainprep.workflow.quality_assurance: Quality assurance workflow.brainprep.workflow.quasiraw: Quasi-RAW workflow.brainprep.workflow: Available workflows.brainprep.workflow.sbm: Surface-based morphometry (SBM) workflow.brainprep.workflow.vbm: Voxel-based morphometry (VBM) workflow.brainprep.wrappers: Functions for running shell commands.