Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.
brainprep.interfaces.plot_brainparc¶
- brainprep.interfaces.plot_brainparc(wm_mask_file, gm_mask_file, csf_mask_file, brain_mask_file, output_dir, entities, dryrun=False)[source]¶
- Parameters:
- wm_mask_fileFile
Binary mask of white matter regions.
- gm_mask_fileFile
Binary mask of gray matter regions.
- csf_mask_fileFile
Binary mask of cerebrospinal fluid regions.
- brain_mask_fileFile
Binary brain mask file.
- output_dirDirectory
FreeSurfer working directory containing all the subjects.
- entitiesdict
A dictionary of parsed BIDS entities including modality.
- dryrunbool
If True, skip actual computation and file writing. Default False.
- Returns:
- brainparc_image_fileFile
Image of the GM mask and GM, WM, CSF tissues histograms.