Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

brainprep.interfaces.morphologist.morphologist_morphometry

brainprep.interfaces.morphologist.morphologist_morphometry(output_dir, dryrun=False)

Extract ROI-based morphometry features and global tissue volumes from morphologist outputs.

This function parses morphologist .csv ROI statistics. It generates two TSV files for sulcal and brain volumes morphometries.

Parameters:

output_dirDirectory

Working directory containing the outputs.

dryrunbool

If True, skip actual computation and file writing. Default False.

Returns:

morphometry_fileslist[File]

TSV files containing ROI-based sulcal and brain volumes morphometries.