Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

brainprep.interfaces.morphologist.morphologist_move

brainprep.interfaces.morphologist.morphologist_move(output_dir, workspace_dir, entities, dryrun=False)

Morpholigist validation.

Move Morphologist outputs (QC file and run directory) from the workspace into the final BIDS derivatives structure, and return the expected output file paths.

Parameters:

output_dirDirectory

Directory where the prep-processing related outputs will be saved.

workspace_dir: Directory

Working directory with the workspace of the current processing, and where subject specific data are symlinked.

entitiesdict

A dictionary of parsed BIDS entities including modality.

dryrunbool

If True, skip actual computation and file writing. Default False.

Returns:

sulci_graphs_fileslist[File]

Left and right hemispheres sulci.

qc_fileFile

QC TSV file.