`brainprep.interfaces.fsl`: FSL functions.¶

FSL functions.

Functions¶

`affine`(anatomical_file, template_file, ...)	Affinely register a BIDS-compliant anatomical image to a template file using FSL's flirt.
`applyaffine`(image_file, template_file, ...)	Apply an affine transformation to a BIDS-compliant image file using FSL's flirt.
`applymask`(image_file, mask_file, output_dir, ...)	Apply an isotropic resampling transformation to a BIDS-compliant image file using FSL's fslmaths.
`deface`(t1_file, output_dir, entities)	Defaces a BIDS-compliant T1-weighted anatomical image using FSL's fsl_deface.
`reorient`(image_file, output_dir, entities)	Reorients a BIDS-compliant anatomical image using FSL's fslreorient2std.
`scale`(image_file, scale, output_dir, entities)	Apply an isotropic resampling transformation to a BIDS-compliant image file using FSL's flirt.