Changelog¶

2.1.0.dev¶

his is a major release featuring significant changes to both the API and CLI. Please review the modifications below.

Doc Create doc with furo.
Enhancement Worflows generate a report file.
Enhancement Anonymize workflow outputs.
Enhancement Worflows generate BIDS-compliant organization.
Enhancement New workflows can generate HTML reporting.
Datasets Toy datasets have been added to test the module.
Enhancement Quasi-RAW preprocessing compute the brain mask using mri_synthstrip.
Enhancement A build‑and‑test container strategy has been released.
Enhancement The software version has been updated, and the corresponding workflow has been revised accordingly.
Enhancement A consolidated quality‑check HTML report can now be generated directly from the CLI.

API A keep_intermediate argument has been added to all workflows to retain intermediate results; useful for debugging.
Doc A user guide is now available.
Enhancement Each workflow now has its own dedicated container, enabling easier upgrades without impacting other workflows.”
Enhancement The brainprep command scope has been limited to the contents of considered container.
Enhancement Each workflow now includes its own dedicated automatic quality‑check procedure.

Deprecation Remove the old dmriprep workflow and tbss workflow (will be updated in v2.1.0).
API Building blocks are now grouped in an interfaces submodule.
Deprecation Path custom white matter mask to recon-all has been deprecated.
Enhancement Use ‘–no-annot’ in surfreg to avoid using the annotation (aparc) to help with the registration. This was described to create some artifacts on the edge of the medial wall (https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi).
Deprecation Workflows have been renamed.

Released September 2022

API This release includes different workflows to process antomical, functional and diffusion MR images.
API All workflows are integrated in a dedicated container to enforce reproducible research.