API SearchΒΆ
This is the class and function reference of brainprep. Please refer to
the user guide for more information and usage examples.
- brainprep.cli.main
- brainprep.cli.make_wrapped
- brainprep.config.Config
- brainprep.datasets.IBCDataset
- brainprep.datasets.OpenMSDataset
- brainprep.datasets.git_download
- brainprep.datasets.ibc.IBCDataset
- brainprep.datasets.openms.OpenMSDataset
- brainprep.datasets.openneuro_download
- brainprep.datasets.utils.git_download
- brainprep.datasets.utils.openneuro_download
- brainprep.decorators.BidsHook
- brainprep.decorators.CoerceparamsHook
- brainprep.decorators.CommandLineWrapperHook
- brainprep.decorators.Hook
- brainprep.decorators.LogRuntimeHook
- brainprep.decorators.OutputdirHook
- brainprep.decorators.PythonWrapperHook
- brainprep.decorators.SaveRuntimeHook
- brainprep.decorators.SignatureHook
- brainprep.interfaces.align
- brainprep.interfaces.amico.noddifit
- brainprep.interfaces.anonfile
- brainprep.interfaces.ants.biasfield
- brainprep.interfaces.applyaffine
- brainprep.interfaces.applymask
- brainprep.interfaces.biasfield
- brainprep.interfaces.brainmask
- brainprep.interfaces.cat12.cat12vbm_morphometry
- brainprep.interfaces.cat12.cat12vbm_workflow
- brainprep.interfaces.cat12.writebatch
- brainprep.interfaces.cat12vbm_morphometry
- brainprep.interfaces.cat12vbm_workflow
- brainprep.interfaces.convertmgz
- brainprep.interfaces.copyfiles
- brainprep.interfaces.deface
- brainprep.interfaces.dtifit
- brainprep.interfaces.dwiprep
- brainprep.interfaces.eulernums
- brainprep.interfaces.fmri_connectivity
- brainprep.interfaces.fmriprep.fmri_connectivity
- brainprep.interfaces.fmriprep.fmriprep_workflow
- brainprep.interfaces.fmriprep_metrics
- brainprep.interfaces.fmriprep_workflow
- brainprep.interfaces.freesurfer.aparcstats2table
- brainprep.interfaces.freesurfer.asegstats2table
- brainprep.interfaces.freesurfer.brainmask
- brainprep.interfaces.freesurfer.convertmgz
- brainprep.interfaces.freesurfer.freesurfer_status
- brainprep.interfaces.freesurfer.mri_convert
- brainprep.interfaces.freesurfer.mris_apply_reg
- brainprep.interfaces.freesurfer.nextbrain
- brainprep.interfaces.freesurfer.reconall
- brainprep.interfaces.freesurfer.reconall_localgi
- brainprep.interfaces.freesurfer.reconall_longitudinal
- brainprep.interfaces.freesurfer.reconall_projection
- brainprep.interfaces.freesurfer.reconall_summary
- brainprep.interfaces.freesurfer.reconall_surfreg
- brainprep.interfaces.freesurfer.reconall_tissues
- brainprep.interfaces.freesurfer.surfreg
- brainprep.interfaces.freesurfer.xhemireg
- brainprep.interfaces.freesurfer_status
- brainprep.interfaces.fsl.align
- brainprep.interfaces.fsl.applyaffine
- brainprep.interfaces.fsl.applymask
- brainprep.interfaces.fsl.deface
- brainprep.interfaces.fsl.dtifit
- brainprep.interfaces.fsl.reorient
- brainprep.interfaces.fsl.scale
- brainprep.interfaces.geolab.geolab_parcellation
- brainprep.interfaces.geolab_parcellation
- brainprep.interfaces.group_level_qa
- brainprep.interfaces.htmlmin
- brainprep.interfaces.maskdiff
- brainprep.interfaces.maskoverlap
- brainprep.interfaces.meancorr
- brainprep.interfaces.morphologist._get_single_match
- brainprep.interfaces.morphologist.morphologist_cmd
- brainprep.interfaces.morphologist.morphologist_morphometry
- brainprep.interfaces.morphologist.morphologist_move
- brainprep.interfaces.morphologist.morphologist_workflow
- brainprep.interfaces.morphologist_workflow
- brainprep.interfaces.movedir
- brainprep.interfaces.mriqc.group_level_qa
- brainprep.interfaces.mriqc.subject_level_qa
- brainprep.interfaces.mriqc_metrics
- brainprep.interfaces.mrtrix3.dwiprep
- brainprep.interfaces.network_entropy
- brainprep.interfaces.nextbrain
- brainprep.interfaces.noddifit
- brainprep.interfaces.parse_defacing
- brainprep.interfaces.parse_qa
- brainprep.interfaces.parse_quasiraw
- brainprep.interfaces.pca
- brainprep.interfaces.plot_brainparc
- brainprep.interfaces.plot_defacing_mosaic
- brainprep.interfaces.plot_histogram
- brainprep.interfaces.plot_network
- brainprep.interfaces.plot_pca
- brainprep.interfaces.plotting.plot_brainparc
- brainprep.interfaces.plotting.plot_defacing_mosaic
- brainprep.interfaces.plotting.plot_histogram
- brainprep.interfaces.plotting.plot_network
- brainprep.interfaces.plotting.plot_pca
- brainprep.interfaces.qualcheck.eulernums
- brainprep.interfaces.qualcheck.fmriprep_metrics
- brainprep.interfaces.qualcheck.maskdiff
- brainprep.interfaces.qualcheck.maskoverlap
- brainprep.interfaces.qualcheck.meancorr
- brainprep.interfaces.qualcheck.mriqc_metrics
- brainprep.interfaces.qualcheck.network_entropy
- brainprep.interfaces.qualcheck.pca
- brainprep.interfaces.qualcheck.sulcirec_metrics
- brainprep.interfaces.qualcheck.vbm_metrics
- brainprep.interfaces.reconall
- brainprep.interfaces.reconall_localgi
- brainprep.interfaces.reconall_longitudinal
- brainprep.interfaces.reconall_projection
- brainprep.interfaces.reconall_summary
- brainprep.interfaces.reconall_surfreg
- brainprep.interfaces.reconall_tissues
- brainprep.interfaces.reorient
- brainprep.interfaces.reporting.parse_defacing
- brainprep.interfaces.reporting.parse_qa
- brainprep.interfaces.reporting.parse_quasiraw
- brainprep.interfaces.scale
- brainprep.interfaces.subject_level_qa
- brainprep.interfaces.sulcirec_metrics
- brainprep.interfaces.synb0disco.synthb0
- brainprep.interfaces.synthb0
- brainprep.interfaces.tractseg.tractseg_parcellation
- brainprep.interfaces.tractseg_parcellation
- brainprep.interfaces.ungzfile
- brainprep.interfaces.utils.anonfile
- brainprep.interfaces.utils.copyfiles
- brainprep.interfaces.utils.htmlmin
- brainprep.interfaces.utils.movedir
- brainprep.interfaces.utils.ungzfile
- brainprep.interfaces.utils.write_uuid_mapping
- brainprep.interfaces.vbm_metrics
- brainprep.interfaces.write_uuid_mapping
- brainprep.interfaces.writebatch
- brainprep.reporting.RSTReport
- brainprep.reporting.generate_qc_report
- brainprep.reporting.html_reporting.HTMLReport
- brainprep.reporting.html_reporting.generate_qc_report
- brainprep.reporting.rst_reporting.RSTReport
- brainprep.reporting.rst_reporting.SingletonReport
- brainprep.reporting.rst_reporting.trace_module_calls
- brainprep.reporting.trace_module_calls
- brainprep.reporting.utils.dataframe_to_html
- brainprep.reporting.utils.inject_with_jinja
- brainprep.reporting.utils.png_image_to_base64
- brainprep.utils.Bunch
- brainprep.utils.bunch.Bunch
- brainprep.utils.bvecbval_from_file
- brainprep.utils.coerce_to_list
- brainprep.utils.coerce_to_path
- brainprep.utils.color.print_call
- brainprep.utils.color.print_category_color
- brainprep.utils.color.print_color
- brainprep.utils.color.print_command
- brainprep.utils.color.print_deprecated
- brainprep.utils.color.print_error
- brainprep.utils.color.print_info
- brainprep.utils.color.print_result
- brainprep.utils.color.print_stdout
- brainprep.utils.color.print_subtitle
- brainprep.utils.color.print_title
- brainprep.utils.color.print_warn
- brainprep.utils.find_first_occurrence
- brainprep.utils.find_stack_level
- brainprep.utils.make_run_id
- brainprep.utils.parse_bids_keys
- brainprep.utils.print_call
- brainprep.utils.print_command
- brainprep.utils.print_deprecated
- brainprep.utils.print_error
- brainprep.utils.print_info
- brainprep.utils.print_result
- brainprep.utils.print_stdout
- brainprep.utils.print_subtitle
- brainprep.utils.print_title
- brainprep.utils.print_warn
- brainprep.utils.sbref_from_file
- brainprep.utils.sidecar_from_file
- brainprep.utils.utils.bvecbval_from_file
- brainprep.utils.utils.check_run_fn
- brainprep.utils.utils.coerce_to_list
- brainprep.utils.utils.coerce_to_path
- brainprep.utils.utils.find_first_occurrence
- brainprep.utils.utils.find_stack_level
- brainprep.utils.utils.make_run_id
- brainprep.utils.utils.parse_bids_keys
- brainprep.utils.utils.sbref_from_file
- brainprep.utils.utils.sidecar_from_file
- brainprep.workflow.brainprep_defacing
- brainprep.workflow.brainprep_fmriprep
- brainprep.workflow.brainprep_group_defacing
- brainprep.workflow.brainprep_group_fmriprep
- brainprep.workflow.brainprep_group_quality_assurance
- brainprep.workflow.brainprep_group_quasiraw
- brainprep.workflow.brainprep_group_reporting
- brainprep.workflow.brainprep_group_sbm
- brainprep.workflow.brainprep_group_sulcirec
- brainprep.workflow.brainprep_group_vbm
- brainprep.workflow.brainprep_longitudinal_sbm
- brainprep.workflow.brainprep_longitudinal_vbm
- brainprep.workflow.brainprep_quality_assurance
- brainprep.workflow.brainprep_quasiraw
- brainprep.workflow.brainprep_sbm
- brainprep.workflow.brainprep_sulcirec
- brainprep.workflow.brainprep_vbm
- brainprep.workflow.defacing.brainprep_defacing
- brainprep.workflow.defacing.brainprep_group_defacing
- brainprep.workflow.dmriprep.brainprep_dmriprep
- brainprep.workflow.fmriprep.brainprep_fmriprep
- brainprep.workflow.fmriprep.brainprep_group_fmriprep
- brainprep.workflow.quality_assurance.brainprep_group_quality_assurance
- brainprep.workflow.quality_assurance.brainprep_quality_assurance
- brainprep.workflow.quasiraw.brainprep_group_quasiraw
- brainprep.workflow.quasiraw.brainprep_quasiraw
- brainprep.workflow.reporting.brainprep_group_reporting
- brainprep.workflow.sbm.brainprep_group_sbm
- brainprep.workflow.sbm.brainprep_longitudinal_sbm
- brainprep.workflow.sbm.brainprep_sbm
- brainprep.workflow.sulcirec.brainprep_group_sulcirec
- brainprep.workflow.sulcirec.brainprep_sulcirec
- brainprep.workflow.vbm.brainprep_group_vbm
- brainprep.workflow.vbm.brainprep_longitudinal_vbm
- brainprep.workflow.vbm.brainprep_vbm
- brainprep.wrappers.check_outputs
- brainprep.wrappers.is_command_installed
- brainprep.wrappers.is_list_list_str
- brainprep.wrappers.is_list_str
- brainprep.wrappers.run_command