Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

brainprep.interfaces.cat12.cat12vbm_wf

brainprep.interfaces.cat12.cat12vbm_wf(t1_files, batch_file, output_dir, entities)[source]

Compute VBM prep-processing using CAT12.

Parameters:
t1_fileslist[File]

Path to the T1 files.

batch_fileFile

Path to the ready for execution CAT12 batch file

output_dirDirectory

Directory where the prep-processing related outputs will be saved.

entitieslist[dict]

Dictionaries of parsed BIDS entities including modality for each input image file.

Returns:
commandlist[str]

Pre-processing command-line.

outputstuple[File | list[File]]

  • gm_files : list[File] - Path to the modulated, normalized gray matter segmentations of the input T1-weighted MRI images.

  • qc_files : list[File] - Visual reports.