Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

brainprep.interfaces.morphologist.morphologist_wf

brainprep.interfaces.morphologist.morphologist_wf(t1_file, output_dir, workspace_dir, entities)

Sulci reconstruction and identification using morphologist.

Parameters:

t1_fileFile

Path to the input T1w image file.

output_dirDirectory

Directory where the prep-processing related outputs will be saved.

workspace_dir: Directory

Working directory with the workspace of the current processing, and where subject specific data are symlinked.

entitiesdict

A dictionary of parsed BIDS entities including modality.*

Returns:

sulci_graphs_fileslist[File]

Left and right hemispheres sulci.

qc_fileFile

QC TSV file.